PoplarV1, Main, Exploration, bibRecord, 002A10

Involvement of microRNA-mediated gene expression regulation in the pathological development of stem canker disease in Populus trichocarpa.

Identifieur interne : 002A10 ( Main/Exploration ); précédent : 002A09; suivant : 002A11

Involvement of microRNA-mediated gene expression regulation in the pathological development of stem canker disease in Populus trichocarpa.

Auteurs : Jia-Ping Zhao [République populaire de Chine] ; Xiao-Ling Jiang ; Bing-Yu Zhang ; Xiao-Hua Su

Source :

PloS one [ 1932-6203 ] ; 2012.

RBID : pubmed:23028709

Descripteurs français

KwdFr :
- ARN des plantes (génétique), ARN des plantes (métabolisme), Ascomycota (physiologie), Gènes de plante (génétique), Maladies des plantes (microbiologie), Populus (génétique), Populus (microbiologie), Populus (physiologie), Régions promotrices (génétique) (génétique), Régulation de l'expression des gènes végétaux (MeSH), Régulation positive (MeSH), Stress physiologique (MeSH), microARN (génétique), microARN (métabolisme).
MESH :
- génétique : ARN des plantes, Gènes de plante, Populus, Régions promotrices (génétique), microARN.
- microbiologie : Maladies des plantes, Populus.
- métabolisme : ARN des plantes, microARN.
- physiologie : Ascomycota, Populus.
- Régulation de l'expression des gènes végétaux, Régulation positive, Stress physiologique.

English descriptors

KwdEn :
- Ascomycota (physiology), Gene Expression Regulation, Plant (MeSH), Genes, Plant (genetics), MicroRNAs (genetics), MicroRNAs (metabolism), Plant Diseases (microbiology), Populus (genetics), Populus (microbiology), Populus (physiology), Promoter Regions, Genetic (genetics), RNA, Plant (genetics), RNA, Plant (metabolism), Stress, Physiological (MeSH), Up-Regulation (MeSH).
MESH :
- chemical , genetics : MicroRNAs, RNA, Plant.
- genetics : Genes, Plant, Populus, Promoter Regions, Genetic.
- chemical , metabolism : MicroRNAs, RNA, Plant.
- microbiology : Plant Diseases, Populus.
- physiology : Ascomycota, Populus.
- Gene Expression Regulation, Plant, Stress, Physiological, Up-Regulation.

Abstract

MicroRNAs (miRNAs), a type of short (21-23 nucleotides), non-coding RNA molecule, mediate repressive gene regulation through RNA silencing at the post-transcriptional level, and play an important role in defense and response to abiotic and biotic stresses. In the present study, Affymetrix® miRNA Array, real-time quantitative PCR (qPCR) for miRNAs and their targets, and miRNA promoter analysis were used to validate the gene expression patterns of miRNAs in Populus trichocarpa plantlets induced with the poplar stem canker pathogen, Botryosphaeria dothidea. Twelve miRNAs (miR156, miR159, miR160, miR164, miR166, miR168, miR172, miR319, miR398, miR408, miR1448, and miR1450) were upregulated in the stem bark of P. trichocarpa, but no downregulated miRNAs were found. Based on analysis of the miRNAs and their targets, a potential co-regulatory network was developed to describe post-transcriptional regulation in the pathological development of poplar stem canker. There was highly complex cross-talk between diverse miRNA pathway responses to biotic and abiotic stresses. The results suggest that miR156 is probably an integral component of the miRNA response to all environmental stresses in plants. Cis-regulatory elements were binding sites for the transcription factors (TFs) on DNA. Promoter analysis revealed that TC-rich repeats and a W1-box motif were both tightly related disease response motifs in Populus. Promoter analysis and target analysis of miRNAs also revealed that some TFs regulate their activation/repression. Furthermore, a feedback regulatory network in the pathological development of poplar stem canker is provided. The results confirm that miRNA pathways regulate gene expression during the pathological development of plant disease, and provide new insights into understanding the onset and development of poplar stem canker.

DOI: 10.1371/journal.pone.0044968
PubMed: 23028709
PubMed Central: PMC3445618

Affiliations:

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<front><div type="abstract" xml:lang="en">MicroRNAs (miRNAs), a type of short (21-23 nucleotides), non-coding RNA molecule, mediate repressive gene regulation through RNA silencing at the post-transcriptional level, and play an important role in defense and response to abiotic and biotic stresses. In the present study, Affymetrix® miRNA Array, real-time quantitative PCR (qPCR) for miRNAs and their targets, and miRNA promoter analysis were used to validate the gene expression patterns of miRNAs in Populus trichocarpa plantlets induced with the poplar stem canker pathogen, Botryosphaeria dothidea. Twelve miRNAs (miR156, miR159, miR160, miR164, miR166, miR168, miR172, miR319, miR398, miR408, miR1448, and miR1450) were upregulated in the stem bark of P. trichocarpa, but no downregulated miRNAs were found. Based on analysis of the miRNAs and their targets, a potential co-regulatory network was developed to describe post-transcriptional regulation in the pathological development of poplar stem canker. There was highly complex cross-talk between diverse miRNA pathway responses to biotic and abiotic stresses. The results suggest that miR156 is probably an integral component of the miRNA response to all environmental stresses in plants. Cis-regulatory elements were binding sites for the transcription factors (TFs) on DNA. Promoter analysis revealed that TC-rich repeats and a W1-box motif were both tightly related disease response motifs in Populus. Promoter analysis and target analysis of miRNAs also revealed that some TFs regulate their activation/repression. Furthermore, a feedback regulatory network in the pathological development of poplar stem canker is provided. The results confirm that miRNA pathways regulate gene expression during the pathological development of plant disease, and provide new insights into understanding the onset and development of poplar stem canker.</div>
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<Abstract><AbstractText>MicroRNAs (miRNAs), a type of short (21-23 nucleotides), non-coding RNA molecule, mediate repressive gene regulation through RNA silencing at the post-transcriptional level, and play an important role in defense and response to abiotic and biotic stresses. In the present study, Affymetrix® miRNA Array, real-time quantitative PCR (qPCR) for miRNAs and their targets, and miRNA promoter analysis were used to validate the gene expression patterns of miRNAs in Populus trichocarpa plantlets induced with the poplar stem canker pathogen, Botryosphaeria dothidea. Twelve miRNAs (miR156, miR159, miR160, miR164, miR166, miR168, miR172, miR319, miR398, miR408, miR1448, and miR1450) were upregulated in the stem bark of P. trichocarpa, but no downregulated miRNAs were found. Based on analysis of the miRNAs and their targets, a potential co-regulatory network was developed to describe post-transcriptional regulation in the pathological development of poplar stem canker. There was highly complex cross-talk between diverse miRNA pathway responses to biotic and abiotic stresses. The results suggest that miR156 is probably an integral component of the miRNA response to all environmental stresses in plants. Cis-regulatory elements were binding sites for the transcription factors (TFs) on DNA. Promoter analysis revealed that TC-rich repeats and a W1-box motif were both tightly related disease response motifs in Populus. Promoter analysis and target analysis of miRNAs also revealed that some TFs regulate their activation/repression. Furthermore, a feedback regulatory network in the pathological development of poplar stem canker is provided. The results confirm that miRNA pathways regulate gene expression during the pathological development of plant disease, and provide new insights into understanding the onset and development of poplar stem canker.</AbstractText>
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Involvement of microRNA-mediated gene expression regulation in the pathological development of stem canker disease in Populus trichocarpa.

Involvement of microRNA-mediated gene expression regulation in the pathological development of stem canker disease in Populus trichocarpa.

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